Stem-loop gma-MIR5772

Accession

MI0019719

Description

Glycine max gma-MIR5772 precursor miRNA

Sequence

2336 reads, 22.0 reads per million, 175 experiments

gucgcaagcaAGAAUGUGAGUUAGAGUGAGCAUCccuaaaaaaagaauuucaaauucuauauuuuugAGAGAAUUUGAAAUCCCACUauuuuagucugucgcaaccuaccuuacgacg
((((.(((..((..(((((..((((.((((.....((......)).((((((((((((.((....))..))))))))))))........)))).)))))))))..))..))).)))).

Structure

-    c   ca  AA     GU    G    CAUCccuaaaaaaaga            -a  u 
 gucg aag  AG  UGUGA  UAGA UGAG                auuucaaauucu  ua u
 |||| |||  ||  |||||  |||| ||||                ||||||||||||  ||  
 cagc uuc  uc  acgcu  gucu auuu                UAAAGUUUAAGA  gu u
g    a   ca  ca     --    g    --------uaUCACCC            GA  u 

Annotation confidence Low

Genome context

chr3: 19529805-19529922 [-]

Mature gma-miR5772-5p

• Accession: MIMAT0023174
• Description: Glycine max gma-miR5772-5p mature miRNA
• Sequence: 11 - AGAAUGUGAGUUAGAGUGAGCAUC - 34
• Evidence: experimental ; Illumina [1]

Mature gma-miR5772-3p

• Accession: MIMAT0054294
• Description: Glycine max gma-miR5772-3p mature miRNA
• Sequence: 68 - AGAGAAUUUGAAAUCCCACU - 87
• Evidence: experimental ; unknown

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553