Stem-loop gma-MIR171o

Accession

MI0019749

Description

Glycine max gma-MIR171o precursor miRNA

Literature search

16 open access papers mention gma-MIR171o
(37 sentences)

Sequence

168262 reads, 808.0 reads per million, 178 experiments

uaagggcuugAGAUAUUGGUACGGUUCAAUCagaagacagugcuuuaugauucuaaagcucucuuauuugaUUGAGCCGUGCCAAUAUCACaugcaaacuuu
.....((.((.(((((((((((((((((((((((.((.((.((((((......)))))).)).)).))))))))))))))))))))))).)).)).......

Structure

--uaagg  u  A                       a  c  u      ug 
       gc ug GAUAUUGGUACGGUUCAAUCaga ga ag gcuuua  a
       || || ||||||||||||||||||||||| || || ||||||   
       cg aC CUAUAACCGUGCCGAGUUaguuu uu uc cgaaau  u
uuucaaa  u  A                       a  c  u      cu 

Annotation confidence High

Genome context

chr13: 31863180-31863281 [+]

Mature gma-miR171o-5p

• Accession: MIMAT0032131
• Description: Glycine max gma-miR171o-5p mature miRNA
• Sequence: 11 - AGAUAUUGGUACGGUUCAAUC - 31
• Evidence: experimental ; Illumina [2]

Mature gma-miR171o-3p

• Accession: MIMAT0023204
• Description: Glycine max gma-miR171o-3p mature miRNA
• Sequence: 72 - UUGAGCCGUGCCAAUAUCAC - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553


2. PubMed ID: 24475082
   Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
   Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
   PLoS One (2014) 9:e86153