Stem-loop gma-MIR399c

Accession

MI0019773

Description

Glycine max gma-MIR399c precursor miRNA

Literature search

14 open access papers mention gma-MIR399c
(91 sentences)

Sequence

90716 reads, 236.0 reads per million, 172 experiments

aaaccagcuauaGGGCUUCUCUUUAUUGGCAGgaaauuaucaugaccacuucaucagauaucuUGCCAAAGGAGAGUUGCCCUGuugcugcuuu
....((((.(((((((..((((((.(((((((((...((((.(((........)))))))))))))))).))))))..))))))).))))....

Structure

aaac    u       UU      A         aau    a   cca 
    cagc auaGGGC  CUCUUU UUGGCAGga   uauc uga   c
    |||| |||||||  |||||| |||||||||   |||| |||    
    gucg uGUCCCG  GAGAGG AACCGUucu   auag acu   u
uuuc    u       UU      A         ---    -   acu 

Annotation confidence High

Genome context

chr20: 39360463-39360556 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR399c

Mature gma-miR399c-5p

• Accession: MIMAT0054340
• Description: Glycine max gma-miR399c-5p mature miRNA
• Sequence: 13 - GGGCUUCUCUUUAUUGGCAG - 32
• Evidence: experimental ; unknown

Mature gma-miR399c-3p

• Accession: MIMAT0023228
• Description: Glycine max gma-miR399c-3p mature miRNA
• Sequence: 64 - UGCCAAAGGAGAGUUGCCCUG - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553