Stem-loop gma-MIR399g

Accession

MI0019787

Description

Glycine max gma-MIR399g precursor miRNA

Literature search

14 open access papers mention gma-MIR399g
(88 sentences)

Sequence

10644 reads, 87.0 reads per million, 166 experiments

guguggaucuucccaguugcagcuguauuacaGGGCAAGUUCUCCAUUGGCAGGuagccacuaugauaugcaucucauguuugcaacuuucuuaguaugcaaucUGCCAAAGGAGAUUUGCCCAGcgauucuccu
....(((((....((((....)))).......((((((((.((((.(((((((((.((.((((.((..((((.........))))....)).))))..)).))))))))).))))))))))))...)))))....

Structure

gugu     uucccaguugcagcuguauuaca        U    A         a  -c    u  --ua    ucu 
    ggauc                       GGGCAAGU CUCC UUGGCAGGu gc  acua ga    ugca   c
    |||||                       |||||||| |||| ||||||||| ||  |||| ||    ||||   a
    cuuag                       CCCGUUUA GAGG AACCGUcua cg  ugau cu    acgu   u
uccu     --------------------cGA        -    A         a  ua    u  uuca    uug 

Annotation confidence High

Genome context

chr8: 9118325-9118459 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR399g

Mature gma-miR399g-5p

• Accession: MIMAT0054354
• Description: Glycine max gma-miR399g-5p mature miRNA
• Sequence: 33 - GGGCAAGUUCUCCAUUGGCAGG - 54
• Evidence: experimental ; unknown

Mature gma-miR399g-3p

• Accession: MIMAT0023242
• Description: Glycine max gma-miR399g-3p mature miRNA
• Sequence: 105 - UGCCAAAGGAGAUUUGCCCAG - 125
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553