Stem-loop gma-MIR166m

Accession

MI0019792

Description

Glycine max gma-MIR166m precursor miRNA

Literature search

36 open access papers mention gma-MIR166m
(209 sentences)

Sequence

4420139 reads, 9574.0 reads per million, 178 experiments

uuucguugcaaaggugagguugagaGGAAUGUUGUCUGGCUCGAGGucauggaggaggaggagaguauugagaugagugaaaguuuccaauggaaauuuacccucuuaacacaaaaaaaaaaauugauucGCGGACCAGGCUUCAUUCCCCacacccaacuuuuuuuuuuauuccu
.........((((((..(((((.(.((((((..((((((((((((.(((((....((((((....((((......)))).((((((((...))))))))..))))))....))...........))))))).)).))))))..))))))))).)))..))))))............

Structure

---uuucguugc      ga   -  a a      UU      -  -    G   -----------  gagg      agaguauugagaugaguga        a 
            aaaggu  ggu ug g GGAAUG  GUCUGG CU CGAG uca           ug    aggagg                   aaguuucc  
            ||||||  ||| || | ||||||  |||||| || |||| |||           ||    ||||||                   |||||||| a
            uuuuca  cca aC C CCUUAC  CGGACC GG Gcuu agu           ac    uucucc                   uuuaaagg  
uccuuauuuuuu      ac   c  - -      UU      A  C    -   uaaaaaaaaaa  acaa      -----------------ca        u 

Annotation confidence High

Genome context

chr9: 36469526-36469701 [+]

Mature gma-miR166m-5p

• Accession: MIMAT0054359
• Description: Glycine max gma-miR166m-5p mature miRNA
• Sequence: 26 - GGAAUGUUGUCUGGCUCGAGG - 46
• Evidence: experimental ; unknown

Mature gma-miR166m-3p

• Accession: MIMAT0023247
• Description: Glycine max gma-miR166m-3p mature miRNA
• Sequence: 131 - GCGGACCAGGCUUCAUUCCCC - 151
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553