Stem-loop hco-mir-5884

Accession

MI0019992

Description

Haemonchus contortus hco-mir-5884 precursor miRNA

Sequence

430201 reads, 4684.0 reads per million, 21 experiments

ccggcucauuucgucucacgucUAGGGUACUGACAUUGAAUGAGUugucaugcagaCCAUUUAAUUUCGUACCCUGGAcguuaugcgaaugcuccugcuu
..((..((((.(((...(((((((((((((.((.((((((((.(((........))))))))))).)))))))))))))))...)))))))..)).....

Structure

---cc  cu    u   cuc             U  C        A   guc 
     gg  cauu cgu   acgucUAGGGUAC GA AUUGAAUG GUu   a
     ||  |||| |||   ||||||||||||| || |||||||| |||    
     cc  guaa gcg   ugcAGGUCCCAUG CU UAAUUUAC Cag   u
uucgu  uc    -   uau             -  U        -   acg 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-5884-5p

• Accession: MIMAT0023316
• Description: Haemonchus contortus hco-miR-5884-5p mature miRNA
• Sequence: 23 - UAGGGUACUGACAUUGAAUGAGU - 45
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5884-3p

• Accession: MIMAT0057925
• Description: Haemonchus contortus hco-miR-5884-3p mature miRNA
• Sequence: 57 - CCAUUUAAUUUCGUACCCUGGA - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4