Stem-loop hco-mir-133

Accession

MI0019993

Description

Haemonchus contortus hco-mir-133 precursor miRNA

Sequence

ggagaagcuguuuuucgcguaugcugguugcagcugacccaauuguuagucaacgaucaAUUGGUCCCCUCCAACCAGCUAAcgagaaaaucguucaauucucc
((((((..((.(((((.(((..((((((((.((..((((.(((((...(....)...)))))))))..)).))))))))..))).))))).)).....))))))

Structure

      ---gc  u     g   au        c  cu    c     uua u 
ggagaa     ug uuuuc cgu  gcugguug ag  gacc aauug   g c
||||||     || ||||| |||  |||||||| ||  |||| |||||   |  
ccucuu     gc aaaag gcA  CGACCAAC UC  CUGG UUAac   c a
      aacuu  u     a   AU        C  CC    -     uag a 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-133

• Accession: MIMAT0023317
• Description: Haemonchus contortus hco-miR-133 mature miRNA
• Sequence: 60 - AUUGGUCCCCUCCAACCAGCUAA - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4