Stem-loop hco-mir-5885a

Accession

MI0019995

Description

Haemonchus contortus hco-mir-5885a precursor miRNA

Literature search

1 open access papers mention hco-mir-5885a
(2 sentences)

Sequence

2887615 reads, 44846.0 reads per million, 21 experiments

gcgcucggucggcaccgauaacAGGGUGUACGUGGUGGUCUGGUAagugugucgcuuaUGAGAUCACGCGUAUAUUCGCcgcgcaaguucgacgccugucgacg
(((((((((....))))).....(((((((((((.((((((.(((((((...))))))).)))))))))))))))))...))))....(((((....)))))..

Structure

--------------------    ucggucggcaccgauaacA           G      G       u 
                    gcgc                   GGGUGUACGUG UGGUCU GUAagug  
                    ||||                   ||||||||||| |||||| ||||||| g
                    cgcg                   CUUAUAUGCGC ACUAGA Uauucgc  
gcagcuguccgcagcuugaa    ----------------cCG           -      G       u 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-5885a-5p

• Accession: MIMAT0057927
• Description: Haemonchus contortus hco-miR-5885a-5p mature miRNA
• Sequence: 23 - AGGGUGUACGUGGUGGUCUGGUA - 45
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5885a-3p

• Accession: MIMAT0023319
• Description: Haemonchus contortus hco-miR-5885a-3p mature miRNA
• Sequence: 59 - UGAGAUCACGCGUAUAUUCGC - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4