Stem-loop hco-mir-5886a

Accession

MI0019996

Description

Haemonchus contortus hco-mir-5886a precursor miRNA

Sequence

177 reads, 2.0 reads per million, 18 experiments

auggaaccccuauuauauugcauguucuucaAACGGAGUCAUCGAUGUGUUCUUguacaaugcuaaGAACAAUCUUUGACUUUGGUUugaagaaauauaugcagucugga
..((....))......(((((((((((((((((((((((((..(((.((((((((((...))).))))))))))..))))))).)))))))))...))))))))).....

Structure

auggaaccccuauuau         ---         -       UC   G       -   c 
                auugcaugu   ucuucaAAC GGAGUCA  GAU UGUUCUU gua  
                |||||||||   ||||||||| |||||||  ||| ||||||| ||| a
                ugacguaua   agaaguUUG UUUCAGU  CUA ACAAGaa cgu  
-----------agguc         uaa         G       UU   -       u   a 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-5886a-5p

• Accession: MIMAT0057928
• Description: Haemonchus contortus hco-miR-5886a-5p mature miRNA
• Sequence: 32 - AACGGAGUCAUCGAUGUGUUCUU - 54
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5886a-3p

• Accession: MIMAT0023320
• Description: Haemonchus contortus hco-miR-5886a-3p mature miRNA
• Sequence: 67 - GAACAAUCUUUGACUUUGGUU - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4