Stem-loop hco-mir-5887

Accession

MI0019997

Description

Haemonchus contortus hco-mir-5887 precursor miRNA

Sequence

2973 reads, 48.0 reads per million, 21 experiments

auacagcagagaaacuacucucCUUUGCUACGCCAUCGGGUGAGCuaaacuaugcUUACCUGAUGGUGUAGCAAAGGGAaguuauucuugccuaaacuauauc
.....((((((.((((..((.((((((((((((((((((((((((........)))))))))))))))))))))))))))))).))).)))............

Structure

-------auaca   -   a    ac  u                        uaa 
            gca gag aacu  uc cCUUUGCUACGCCAUCGGGUGAGC   a
            ||| ||| ||||  || ||||||||||||||||||||||||    
            cgu cuu uuga  AG GGAAACGAUGUGGUAGUCCAUUcg   c
cuauaucaaauc   u   a    --  -                        uau 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-5887-5p

• Accession: MIMAT0057929
• Description: Haemonchus contortus hco-miR-5887-5p mature miRNA
• Sequence: 23 - CUUUGCUACGCCAUCGGGUGAGC - 45
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5887-3p

• Accession: MIMAT0023321
• Description: Haemonchus contortus hco-miR-5887-3p mature miRNA
• Sequence: 56 - UUACCUGAUGGUGUAGCAAAGGGA - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4