Stem-loop hco-mir-5888

Accession

MI0019998

Description

Haemonchus contortus hco-mir-5888 precursor miRNA

Sequence

22275 reads, 244.0 reads per million, 21 experiments

uauacuaaauacuuugaaggugAAGCGGAUCUAGGGAUGCUUCUGuauacuucucuacagaagcaucccuagguccucuacaccuucaaguauaagccucaugaaccuauaacuuGAUAUGGAGGUCCCGGGAAGAuguu
........((((((.(((((((.((.(((((((((((((((((((((........))))))))))))))))))))).)).)))))))))))))..(((((......(........).....)))))..............

Structure

---------------------------------------uauacuaa      u       A  C                     uac 
                                               auacuu gaaggug AG GGAUCUAGGGAUGCUUCUGua   u
                                               |||||| ||||||| || |||||||||||||||||||||    
                                               uaugaa cuuccac uc ccuggaucccuacgaagacau   u
uuguAGAAGGGCCCUGGAGGUAUAGuucaauauccaaguacuccgaa      -       a  u                     cuc 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-5888-5p

• Accession: MIMAT0023322
• Description: Haemonchus contortus hco-miR-5888-5p mature miRNA
• Sequence: 23 - AAGCGGAUCUAGGGAUGCUUCUG - 45
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5888-3p

• Accession: MIMAT0057930
• Description: Haemonchus contortus hco-miR-5888-3p mature miRNA
• Sequence: 116 - GAUAUGGAGGUCCCGGGAAGA - 136
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4