Stem-loop hco-mir-5889

Accession

MI0020000

Description

Haemonchus contortus hco-mir-5889 precursor miRNA

Sequence

16537 reads, 122.0 reads per million, 19 experiments

aaaugcguauccaugaaucgacAUCUCCAUUCCUUAGGGAAAGCUcaaggaccagcUUUCUGUAAGGAAUGGAGAUGUugauucaugcgucagcucgaga
....((..((.(((((((((((((((((((((((((.((((((((........)))))))).))))))))))))))))))))))))).))..))......

Structure

--aaau  gu  c                         G        caa 
      gc  au caugaaucgacAUCUCCAUUCCUUA GGAAAGCU   g
      ||  || ||||||||||||||||||||||||| ||||||||    
      cg  ug guacuuaguUGUAGAGGUAAGGAAU UCUUUcga   g
agagcu  ac  c                         G        cca 

Annotation confidence Medium

Genome context

Unknown

Mature hco-miR-5889-5p

• Accession: MIMAT0057932
• Description: Haemonchus contortus hco-miR-5889-5p mature miRNA
• Sequence: 23 - AUCUCCAUUCCUUAGGGAAAGCU - 45
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5889-3p

• Accession: MIMAT0023324
• Description: Haemonchus contortus hco-miR-5889-3p mature miRNA
• Sequence: 57 - UUUCUGUAAGGAAUGGAGAUGU - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4