Stem-loop hco-mir-79

Accession

MI0020002

Description

Haemonchus contortus hco-mir-79 precursor miRNA

Sequence

65355 reads, 542.0 reads per million, 21 experiments

uucuguccgguuugguucuucuCUUUGGUGAUUUGGCUUAUAUGAcugacaugcaucAUAAAGCUAGGUUACCAAAGCUAagcgccugacgccuuuuugccuau
.........(((.(((.(((..(((((((((((((((((.(((((.((.....))))))))))))))))))))))))..))).))).)))..............

Structure

-----uucuguccg   u   u   cu                 A     c  a 
              guu ggu cuu  CUUUGGUGAUUUGGCUU UAUGA ug c
              ||| ||| |||  ||||||||||||||||| ||||| || a
              cag ccg gaA  GAAACCAUUGGAUCGAA AUAcu ac u
uauccguuuuuccg   u   c   UC                 -     -  g 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-79-5p

• Accession: MIMAT0057933
• Description: Haemonchus contortus hco-miR-79-5p mature miRNA
• Sequence: 23 - CUUUGGUGAUUUGGCUUAUAUGA - 45
• Evidence: experimental ; Illumina [1]

Mature hco-miR-79-3p

• Accession: MIMAT0023326
• Description: Haemonchus contortus hco-miR-79-3p mature miRNA
• Sequence: 58 - AUAAAGCUAGGUUACCAAAGCUA - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4