Stem-loop hco-mir-46

Accession

MI0020003

Description

Haemonchus contortus hco-mir-46 precursor miRNA

Sequence

317134 reads, 2287.0 reads per million, 20 experiments

ugccauguggauacgguagcugAAGAGAGCCGUCCGUUGACAGUucacuauggacgcUGUCAUGGAGUCGCUCUCUUCAgacuccuagauccgugaauuugcccac
........((((..((.(((((((((((((..(((((.((((((((......)).)))))))))))...))))))))))).)).))..))))(((........)))

Structure

------ugccaugu    ac  u  -           -CG     U      -  ac 
              ggau  gg ag cugAAGAGAGC   UCCGU GACAGU uc  u
              ||||  || || |||||||||||   ||||| |||||| ||   
              ccua  uc uc gACUUCUCUCG   AGGUA CUGUcg ag  a
cacccguuuaagug    ga  c  a           CUG     -      c  gu 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-46-5p

• Accession: MIMAT0057934
• Description: Haemonchus contortus hco-miR-46-5p mature miRNA
• Sequence: 23 - AAGAGAGCCGUCCGUUGACAGU - 44
• Evidence: experimental ; Illumina [1]

Mature hco-miR-46-3p

• Accession: MIMAT0023327
• Description: Haemonchus contortus hco-miR-46-3p mature miRNA
• Sequence: 58 - UGUCAUGGAGUCGCUCUCUUCA - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4