Stem-loop hco-mir-50

Accession

MI0020005

Description

Haemonchus contortus hco-mir-50 precursor miRNA

Literature search

4 open access papers mention hco-mir-50
(14 sentences)

Sequence

3944003 reads, 27268.0 reads per million, 21 experiments

uuccacaauggcugcuuuagcucUGAUAUGUCUGGUAUUCUUGGGuucagugauaaCCAGAACUAUUAGACAUAUCGAAgaucgagcgugccaccacuacugcug
........(((((((((...((.((((((((((((((((((.((............)))))).)))))))))))))).))...))))).))))............

Structure

----uuccacaa    -     uag  c              -    U  Guuca 
            uggc ugcuu   cu UGAUAUGUCUGGUA UUCU GG     g
            |||| |||||   || |||||||||||||| |||| ||      
            accg gcgag   gA GCUAUACAGAUUAU AAGA CC     u
gucgucaucacc    u     cua  A              C    -  aauag 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-50-5p

• Accession: MIMAT0023329
• Description: Haemonchus contortus hco-miR-50-5p mature miRNA
• Sequence: 24 - UGAUAUGUCUGGUAUUCUUGGG - 45
• Evidence: experimental ; Illumina [1]

Mature hco-miR-50-3p

• Accession: MIMAT0057935
• Description: Haemonchus contortus hco-miR-50-3p mature miRNA
• Sequence: 57 - CCAGAACUAUUAGACAUAUCGAA - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4