Stem-loop hco-mir-50

Accession

MI0020005

Description

Haemonchus contortus hco-mir-50 precursor miRNA

Literature search

2 open access papers mention hco-mir-50
(12 sentences)

Sequence

uuccacaauggcugcuuuagcucUGAUAUGUCUGGUAUUCUUGGGuucagugauaaccagaacuauuagacauaucgaagaucgagcgugccaccacuacugcug
........(((((((((...((.((((((((((((((((((.((............)))))).)))))))))))))).))...))))).))))............

Structure

----uuccacaa    -     uag  c              -    U  Guuca 
            uggc ugcuu   cu UGAUAUGUCUGGUA UUCU GG     g
            |||| |||||   || |||||||||||||| |||| ||      
            accg gcgag   ga gcuauacagauuau aaga cc     u
gucgucaucacc    u     cua  a              c    -  aauag 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-50

• Accession: MIMAT0023329
• Description: Haemonchus contortus hco-miR-50 mature miRNA
• Sequence: 24 - UGAUAUGUCUGGUAUUCUUGGG - 45
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4