Stem-loop hco-mir-250

Accession

MI0020006

Description

Haemonchus contortus hco-mir-250 precursor miRNA

Literature search

1 open access papers mention hco-mir-250
(1 sentences)

Sequence

19644 reads, 181.0 reads per million, 21 experiments

ccuacaguuggcugucgcccgaCCGGCAGUUGCCUCGUGAUCCgugaucuguagaUCGAAUCACAGCCAACUGCUGCUcgggagaaugccguucgacccagaa
.........(((..((.(((((.(((((((((.((.(((((...(((((....))))).))))))).))))))))).))))).))..))).............

Structure

----ccuacaguu   ug  g     C         C  C     CCg     u 
             ggc  uc cccga CGGCAGUUG CU GUGAU   ugauc g
             |||  || ||||| ||||||||| || |||||   |||||  
             ccg  ag gggcU GUCGUCAAC GA CACUA   GCUag u
aagacccagcuug   ua  a     C         C  -     --A     a 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-250-5p

• Accession: MIMAT0057936
• Description: Haemonchus contortus hco-miR-250-5p mature miRNA
• Sequence: 23 - CCGGCAGUUGCCUCGUGAUCC - 43
• Evidence: experimental ; Illumina [1]

Mature hco-miR-250-3p

• Accession: MIMAT0023330
• Description: Haemonchus contortus hco-miR-250-3p mature miRNA
• Sequence: 56 - UCGAAUCACAGCCAACUGCUGCU - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4