Stem-loop hco-mir-5892a

Accession

MI0020007

Description

Haemonchus contortus hco-mir-5892a precursor miRNA

Sequence

2458 reads, 27.0 reads per million, 19 experiments

uaacgagccuuccgguccugaaguuugcucAGAUGAUCCAGAUGUUAGUCGCccgcauggaaagcAAUUAACAUUUGGAUCAUCUGAAcgaucuucgaggaugcuauucg
.....(((......(((((((((.(((.(((((((((((((((((((((.((((....))...)).))))))))))))))))))))).))).)))).)))))))).....

Structure

uaacg   cuuccg     -    u   c                     C  ---  g 
     agc      guccu gaag uug ucAGAUGAUCCAGAUGUUAGU GC   cc c
     |||      ||||| |||| ||| ||||||||||||||||||||| ||   ||  
     ucg      uagga cuuc agc AGUCUACUAGGUUUACAAUUA cg   gg a
gcuua   ------     g    u   A                     A  aaa  u 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-5892a-5p

• Accession: MIMAT0057937
• Description: Haemonchus contortus hco-miR-5892a-5p mature miRNA
• Sequence: 31 - AGAUGAUCCAGAUGUUAGUCGC - 52
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5892a-3p

• Accession: MIMAT0023331
• Description: Haemonchus contortus hco-miR-5892a-3p mature miRNA
• Sequence: 66 - AAUUAACAUUUGGAUCAUCUGAA - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4