Stem-loop hco-mir-61

Accession

MI0020011

Description

Haemonchus contortus hco-mir-61 precursor miRNA

Literature search

2 open access papers mention hco-mir-61
(12 sentences)

Sequence

982037 reads, 8434.0 reads per million, 21 experiments

uuguguuccugcugugcuccugcucacuaacCCCGGGUGACUGGCUGGUCCUGgcuacggcucaUGACUAGACUGUUACUCGGCGUggguggcagugcucaaaugucgcc
..(((.......((.((..((((.((((.((.(((((((((...((((((.((((....)).)).))))))...))))))))).)).)))))))).)).)).....))).

Structure

uu   uuccugc  u  uc    u    a  C         UGG      C  -  u 
  gug       ug gc  cugc cacu ac CCGGGUGAC   CUGGUC UG gc a
  |||       || ||  |||| |||| || |||||||||   |||||| || ||  
  cgc       ac cg  gacg gugg UG GGCUCAUUG   GAUCAG ac cg c
-c   --uguaa  u  -u    -    g  C         UCA      U  u  g 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-61-5p

• Accession: MIMAT0057941
• Description: Haemonchus contortus hco-miR-61-5p mature miRNA
• Sequence: 32 - CCCGGGUGACUGGCUGGUCCUG - 53
• Evidence: experimental ; Illumina [1]

Mature hco-miR-61-3p

• Accession: MIMAT0023335
• Description: Haemonchus contortus hco-miR-61-3p mature miRNA
• Sequence: 65 - UGACUAGACUGUUACUCGGCGU - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4