Stem-loop hco-mir-5895

Accession

MI0020013

Description

Haemonchus contortus hco-mir-5895 precursor miRNA

Literature search

1 open access papers mention hco-mir-5895
(11 sentences)

Sequence

3266332 reads, 29261.0 reads per million, 21 experiments

ccaaaccugccgaggucuaggcUACCCGUAGCAUCUGUAUGUCUcaauuugaagAUAUGCAUUUGCUGUGGGUGACcaaagcccgguuuauuggaccg
((((....((((.(((...((.(((((((((((..(((((((((((...)).)))))))))..))))))))))).))...)))))))...))))....

Structure

----    accu    a   cua  c           UC         -  a 
    ccaa    gccg ggu   gg UACCCGUAGCA  UGUAUGUCU ca  
    ||||    |||| |||   || |||||||||||  ||||||||| || u
    gguu    uggc ccg   cC GUGGGUGUCGU  ACGUAUAga gu  
gcca    -auu    -   aaa  A           UU         a  u 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-5895-5p

• Accession: MIMAT0023337
• Description: Haemonchus contortus hco-miR-5895-5p mature miRNA
• Sequence: 23 - UACCCGUAGCAUCUGUAUGUCU - 44
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5895-3p

• Accession: MIMAT0057943
• Description: Haemonchus contortus hco-miR-5895-3p mature miRNA
• Sequence: 55 - AUAUGCAUUUGCUGUGGGUGAC - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4