Stem-loop hco-mir-124

Accession

MI0020014

Description

Haemonchus contortus hco-mir-124 precursor miRNA

Literature search

2 open access papers mention hco-mir-124
(2 sentences)

Sequence

10835 reads, 91.0 reads per million, 19 experiments

ccguaucgacgcuggaucgcuuCGCUUUCAUCGGUGACUUUAGUgugaaaugcaacUAAGGCACGCGGUGAAUGCCAAgcgaauaaagcguuucuuccuccu
.......((((((...((((((.((.((((((((((.(((((((((.....)).)))))))))).))))))).)).))))))....))))))..........

Structure

---ccguauc      -gga      C  U       -   A       -  g 
          gacgcu    ucgcuu GC UUCAUCG GUG CUUUAGU gu a
          ||||||    |||||| || ||||||| ||| ||||||| || a
          uugcga    agcgAA CG AAGUGGC CAC GGAAUca cg a
uccuccuucu      aaua      C  U       G   -       a  u 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-124-5p

• Accession: MIMAT0057944
• Description: Haemonchus contortus hco-miR-124-5p mature miRNA
• Sequence: 23 - CGCUUUCAUCGGUGACUUUAGU - 44
• Evidence: experimental ; Illumina [1]

Mature hco-miR-124-3p

• Accession: MIMAT0023338
• Description: Haemonchus contortus hco-miR-124-3p mature miRNA
• Sequence: 57 - UAAGGCACGCGGUGAAUGCCAA - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4