Stem-loop hco-mir-5898

Accession

MI0020018

Description

Haemonchus contortus hco-mir-5898 precursor miRNA

Sequence

uuucuucuugacuaccuuacgcUUUUGAUUGUUACUAAACUUUUgucuuguuuauacgaCAGUUUGGAACAAUCGAAGCCgugcggugguauggacuucuug
.....(((..((((((.((((.(((((((((((.(((((((.((((.........)))).)))))))))))))))))).)))).))))))..))).......

Structure

--uuucu   ug      u    c           A       U    cuu 
       ucu  acuacc uacg UUUUGAUUGUU CUAAACU UUgu   g
       |||  |||||| |||| ||||||||||| ||||||| ||||   u
       agg  uggugg gugC GAAGCUAACAA GGUUUGA agca   u
guucuuc   ua      c    C           -       C    uau 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-5898-5p

• Accession: MIMAT0023342
• Description: Haemonchus contortus hco-miR-5898-5p mature miRNA
• Sequence: 23 - UUUUGAUUGUUACUAAACUUUU - 44
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5898-3p

• Accession: MIMAT0023343
• Description: Haemonchus contortus hco-miR-5898-3p mature miRNA
• Sequence: 60 - CAGUUUGGAACAAUCGAAGCC - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4