Stem-loop hco-mir-5899

Accession

MI0020019

Description

Haemonchus contortus hco-mir-5899 precursor miRNA

Literature search

1 open access papers mention hco-mir-5899
(1 sentences)

Sequence

10088880 reads, 70558.0 reads per million, 21 experiments

cgucugugugauucauacagcaCAGGCUAUGCAUUCCGUGUGCAUuuucuaugacugUACCCGUAAUGUACAUAGCUUGAGcugugugacuucuccuauucauucuu
.........((.(((((((((.(((((((((((((.((.(((((.((.....)).))))).)).))))..))))))))).)))))))))..))..............

Structure

-----cgucugugu  -u         a         --    C  U     U  u 
              ga  ucauacagc CAGGCUAUG  CAUU CG GUGCA uu c
              ||  ||||||||| |||||||||  |||| || ||||| || u
              cu  agugugucG GUUCGAUAC  GUAA GC CAUgu ag a
uucuuacuuauccu  uc         A         AU    U  C     c  u 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-5899-5p

• Accession: MIMAT0057947
• Description: Haemonchus contortus hco-miR-5899-5p mature miRNA
• Sequence: 23 - CAGGCUAUGCAUUCCGUGUGCAU - 45
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5899-3p

• Accession: MIMAT0023344
• Description: Haemonchus contortus hco-miR-5899-3p mature miRNA
• Sequence: 58 - UACCCGUAAUGUACAUAGCUUGAG - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4