Stem-loop hco-lin-4

Accession

MI0020020

Description

Haemonchus contortus hco-lin-4 precursor miRNA

Literature search

10 open access papers mention hco-lin-4
(27 sentences)

Sequence

6983069 reads, 54783.0 reads per million, 21 experiments

ucuuuccucgaucacuauccugcUCCCUGAGACCUCAAUUGCGAcugcuaaaagaucGCGAAUUGUGACCUCAGGAUACaggcgcggugacaaacugggugu
....(((....(((((..((((...((((((..(.(((((((((((......)).)))).))))).)..))))))...))))...)))))......)))...

Structure

ucuu   --ucga     -au    cUC      AC U     -    -  gc 
    ucc      ucacu   ccug   CCUGAG  C CAAUU GCGA cu  u
    |||      |||||   ||||   ||||||  | ||||| |||| ||   
    ggg      agugg   ggaC   GGACUC  G GUUAA CGcu ga  a
-ugu   ucaaac     cgc    AUA      CA U     G    a  aa 

Annotation confidence High

Genome context

Unknown

Mature hco-lin-4-5p

• Accession: MIMAT0023345
• Description: Haemonchus contortus hco-lin-4-5p mature miRNA
• Sequence: 24 - UCCCUGAGACCUCAAUUGCGA - 44
• Evidence: experimental ; Illumina [1]

Mature hco-lin-4-3p

• Accession: MIMAT0057948
• Description: Haemonchus contortus hco-lin-4-3p mature miRNA
• Sequence: 58 - GCGAAUUGUGACCUCAGGAUAC - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4