Stem-loop hco-mir-87a

Accession

MI0020022

Description

Haemonchus contortus hco-mir-87a precursor miRNA

Literature search

1 open access papers mention hco-mir-87a
(1 sentences)

Sequence

151306 reads, 1160.0 reads per million, 21 experiments

ccaugaaugagcuccgucucgcCGCCUGAACCUUUCGUCUCAACCUcuaugccgggcagGUGAGCAAAGUUUCAGGUGUGCgagcggacucguauacuccguugcc
......(((((.((((.(((((((((((((.((((.(.((((.(((((......)).)))))))))))).)))))))).)))))))))))))).............

Structure

-------ccauga     c    u     -        C    C U    A   -  au 
             augag uccg cucgc CGCCUGAA CUUU G CUCA CCU cu  g
             ||||| |||| ||||| |||||||| |||| | |||| ||| ||   
             ugcuc aggc gagCG GUGGACUU GAAA C GAGU Gga gg  c
ccguugccucaua     -    -     U        U    - -    -   c  gc 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-87a-5p

• Accession: MIMAT0057950
• Description: Haemonchus contortus hco-miR-87a-5p mature miRNA
• Sequence: 23 - CGCCUGAACCUUUCGUCUCAACCU - 46
• Evidence: experimental ; Illumina [1]

Mature hco-miR-87a-3p

• Accession: MIMAT0023347
• Description: Haemonchus contortus hco-miR-87a-3p mature miRNA
• Sequence: 60 - GUGAGCAAAGUUUCAGGUGUGC - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4