Stem-loop hco-mir-9

Accession

MI0020023

Description

Haemonchus contortus hco-mir-9 precursor miRNA

Literature search

2 open access papers mention hco-mir-9
(2 sentences)

Sequence

1118808 reads, 11278.0 reads per million, 21 experiments

ucuaaaagccgagccuauugaucUCUUUGGUUAUCUAGCUGUAUGAcuuuauggacucAUAAGGCUGGACGACUAAAGGAAucaauucgucgcucgcucucuuga
......(((.((((..((((((.(((((((((.(((((((.(((((((....))..))))).))))))).))))))))).)))))).....))))))).......

Structure

-ucuaaa   c    ---cu      c         A       G     --  u 
       agc gagc     auugau UCUUUGGUU UCUAGCU UAUGA  cu u
       ||| ||||     |||||| ||||||||| ||||||| |||||  ||  
       ucg cucg     uaacuA GGAAAUCAG AGGUCGG AUAcu  gg a
aguucuc   -    cugcu      A         C       A     ca  u 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-9-5p

• Accession: MIMAT0023348
• Description: Haemonchus contortus hco-miR-9-5p mature miRNA
• Sequence: 24 - UCUUUGGUUAUCUAGCUGUAUGA - 46
• Evidence: experimental ; Illumina [1]

Mature hco-miR-9-3p

• Accession: MIMAT0057951
• Description: Haemonchus contortus hco-miR-9-3p mature miRNA
• Sequence: 59 - AUAAGGCUGGACGACUAAAGGAA - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4