Stem-loop hco-mir-87b

Accession

MI0020024

Description

Haemonchus contortus hco-mir-87b precursor miRNA

Literature search

1 open access papers mention hco-mir-87b
(1 sentences)

Sequence

422308 reads, 2953.0 reads per million, 21 experiments

uacccuauaaggaugguccaucCCGCCUGACACUUGACUCAAACCUcauuuaaagaagGUGAGCAAAGUCUCAGGUGUGGcggccuauccuagaunnnnnnnnnng
.........(((((((.((..(((((((((.((((..(((..(((((.......).)))))))..)))).))))))).)).)).)))))))...............

Structure

------uacccuaua       u  au  -       C    GA   AA    - au 
               aggaugg cc  cC CGCCUGA ACUU  CUC  ACCU c  u
               ||||||| ||  || ||||||| ||||  |||  |||| |  u
               uccuauc gg  GG GUGGACU UGAA  GAG  UGga g  a
gnnnnnnnnnnuaga       c  -c  U       C    AC   --    a aa 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-87b-5p

• Accession: MIMAT0057952
• Description: Haemonchus contortus hco-miR-87b-5p mature miRNA
• Sequence: 23 - CCGCCUGACACUUGACUCAAACCU - 46
• Evidence: experimental ; Illumina [1]

Mature hco-miR-87b-3p

• Accession: MIMAT0023349
• Description: Haemonchus contortus hco-miR-87b-3p mature miRNA
• Sequence: 59 - GUGAGCAAAGUCUCAGGUGUGG - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4