Stem-loop hco-mir-86

Accession

MI0020025

Description

Haemonchus contortus hco-mir-86 precursor miRNA

Literature search

3 open access papers mention hco-mir-86
(4 sentences)

Sequence

96912 reads, 718.0 reads per million, 21 experiments

uuuggcagagcgacccaccaguUAAGUGAAUGCUUUGCCACAGUCUuagacauuguaagCUGGGCCGAGGUUCGCUUAGGCuggagggcgccgacaucggguc
..((...(.(((.(((.((((((((((((((.(((.(((.(((.((((.......)))))))))).)))))))))))).))))).)))))))..)).......

Structure

-----uu  gca a   a   a     -         G   U   A   U    ga 
       ug   g gcg ccc ccagu UAAGUGAAU CUU GCC CAG CUua  c
       ||   | ||| ||| ||||| ||||||||| ||| ||| ||| ||||  a
       ac   c cgc ggg gguCG AUUCGCUUG GAG CGG GUC gaau  u
cugggcu  -ag -   -   a     G         -   C   -   -    gu 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-86-5p

• Accession: MIMAT0023350
• Description: Haemonchus contortus hco-miR-86-5p mature miRNA
• Sequence: 23 - UAAGUGAAUGCUUUGCCACAGUCU - 46
• Evidence: experimental ; Illumina [1]

Mature hco-miR-86-3p

• Accession: MIMAT0057953
• Description: Haemonchus contortus hco-miR-86-3p mature miRNA
• Sequence: 60 - CUGGGCCGAGGUUCGCUUAGGC - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4