Stem-loop hco-mir-86

Accession

MI0020025

Description

Haemonchus contortus hco-mir-86 precursor miRNA

Literature search

1 open access papers mention hco-mir-86
(2 sentences)

Sequence

uuuggcagagcgacccaccaguUAAGUGAAUGCUUUGCCACAGUCUuagacauuguaagcugggccgagguucgcuuaggcuggagggcgccgacaucggguc
..((...(.(((.(((.((((((((((((((.(((.(((.(((.((((.......)))))))))).)))))))))))).))))).)))))))..)).......

Structure

-----uu  gca a   a   a     -         G   U   A   U    ga 
       ug   g gcg ccc ccagu UAAGUGAAU CUU GCC CAG CUua  c
       ||   | ||| ||| ||||| ||||||||| ||| ||| ||| ||||  a
       ac   c cgc ggg ggucg auucgcuug gag cgg guc gaau  u
cugggcu  -ag -   -   a     g         -   c   -   -    gu 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-86

• Accession: MIMAT0023350
• Description: Haemonchus contortus hco-miR-86 mature miRNA
• Sequence: 23 - UAAGUGAAUGCUUUGCCACAGUCU - 46
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4