Stem-loop hco-mir-5902

Accession

MI0020027

Description

Haemonchus contortus hco-mir-5902 precursor miRNA

Sequence

uugucaguagccaucaacucucUCUGGGAUAACACCUCUCUUCAgcgugaccgucaugAAGAGGAGCGUUGUCACAGUGAgggugaaaguggcugaaugugac
..((((.(((((((..((((((.(((.((((((.(.(((((((((((....)))..)))))))).).)))))).))).))))))....)))))))....))))

Structure

uu    ---g       --ca      U   G      A C        --   u 
  guca    uagccau    acucuc CUG GAUAAC C UCUCUUCA  gcg g
  ||||    |||||||    |||||| ||| |||||| | ||||||||  |||  
  cagu    gucggug    ugggAG GAC CUGUUG G GGAGAAgu  ugc a
--    guaa       aaag      U   A      C A        ac   c 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-5902-5p

• Accession: MIMAT0023352
• Description: Haemonchus contortus hco-miR-5902-5p mature miRNA
• Sequence: 23 - UCUGGGAUAACACCUCUCUUCA - 44
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5902-3p

• Accession: MIMAT0023353
• Description: Haemonchus contortus hco-miR-5902-3p mature miRNA
• Sequence: 59 - AAGAGGAGCGUUGUCACAGUGA - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4