Stem-loop hco-mir-5904a

Accession

MI0020031

Description

Haemonchus contortus hco-mir-5904a precursor miRNA

Sequence

716 reads, 6.0 reads per million, 18 experiments

ccaucgcuugucauuguuuucgAGUGUGAUAGUGGUUUUGCAAacugaaguauugUAAACCCACUAUUUUCACUUCGAaaaugagaagaucguucucaca
...............(((((((((((.((((((((.(((((((((....)).))))))).))))))))..))).))))))))(((((.....)))))...

Structure

---ccaucgcuugucauu        -   -U        U       -  u 
                  guuuucgA GUG  GAUAGUGG UUUGCAA ac g
                  |||||||| |||  |||||||| ||||||| ||  
                  uaaaAGCU CAC  UUAUCACC AAAUguu ug a
acacucuugcuagaagag        U   UU        C       a  a 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-5904a-5p

• Accession: MIMAT0023357
• Description: Haemonchus contortus hco-miR-5904a-5p mature miRNA
• Sequence: 23 - AGUGUGAUAGUGGUUUUGCAA - 43
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5904a-3p

• Accession: MIMAT0057957
• Description: Haemonchus contortus hco-miR-5904a-3p mature miRNA
• Sequence: 56 - UAAACCCACUAUUUUCACUUCGA - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4