Stem-loop hco-mir-71

Accession

MI0020032

Description

Haemonchus contortus hco-mir-71 precursor miRNA

Literature search

7 open access papers mention hco-mir-71
(14 sentences)

Sequence

36429550 reads, 331679.0 reads per million, 21 experiments

ugccagccggugcauggagagagugcgaguaguucugagggUGAAAGACAUGGGUAGUGAGACgcuuuguucuggccgUAUCACUAUUCUGUUUUUCGCCcuuugaaucuacgcaauaugca
.(((....)))((((.......))))..(((((((.((((((((((((((.(((((((((.(((((.......)).))).))))))))))))))))))))))).))).))))(((...))).

Structure

ugccagccggugcauggagagagugcga    -   u              U         G   -  uu 
                            guag uuc gagggUGAAAGACA GGGUAGUGA ACg cu  g
                            |||| ||| |||||||||||||| ||||||||| ||| ||  u
                            cauc aag uucCCGCUUUUUGU CUUAUCACU Ugc gg  u
------------------acguauaacg    u   u              -         A   c  uc 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-71-5p

• Accession: MIMAT0023358
• Description: Haemonchus contortus hco-miR-71-5p mature miRNA
• Sequence: 42 - UGAAAGACAUGGGUAGUGAGAC - 63
• Evidence: experimental ; Illumina [1]

Mature hco-miR-71-3p

• Accession: MIMAT0057958
• Description: Haemonchus contortus hco-miR-71-3p mature miRNA
• Sequence: 79 - UAUCACUAUUCUGUUUUUCGCC - 100
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4