Stem-loop hco-mir-5905

Accession

MI0020033

Description

Haemonchus contortus hco-mir-5905 precursor miRNA

Sequence

129 reads, 2.0 reads per million, 19 experiments

cugaguagaucacacggagaggUCUGAAAGGCUGAAGUUUUUGGCguuaaucgguugcCAGGACUUCAUCUUUUUAGACUuuuccgaggucaaagcuuuuug
..((((.((((...(((((((((((((((((.(((((((((.((((.........))))))))))))).))))))))))))))))).))))...))))....

Structure

--cu    --a    aca                 C         U    uua 
    gagu   gauc   cggagaggUCUGAAAGG UGAAGUUUU GGCg   a
    ||||   ||||   ||||||||||||||||| ||||||||| ||||   u
    uucg   cugg   gccuuuUCAGAUUUUUC ACUUCAGGA Ccgu   c
guuu    aaa    --a                 U         -    ugg 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-5905-5p

• Accession: MIMAT0023359
• Description: Haemonchus contortus hco-miR-5905-5p mature miRNA
• Sequence: 23 - UCUGAAAGGCUGAAGUUUUUGGC - 45
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5905-3p

• Accession: MIMAT0057959
• Description: Haemonchus contortus hco-miR-5905-3p mature miRNA
• Sequence: 59 - CAGGACUUCAUCUUUUUAGACU - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4