Stem-loop hco-mir-5907

Accession

MI0020035

Description

Haemonchus contortus hco-mir-5907 precursor miRNA

Sequence

2499 reads, 23.0 reads per million, 18 experiments

uuucuguuucgaauugauuucgAGUCCAACAGAGGUAGUCACUCaauuaugacgagUGAACCCUUUGUCGUGACAUCGAgaacuuuucgauauuaucgucc
........(((((..(.((((((((((.(((((((...((((((.........))))))..))))))).).))).)))))).)..)))))...........

Structure

---uuucuguu     uu a      -   - A       UAG      aau 
           ucgaa  g uuucgA GUC C ACAGAGG   UCACUC   u
           |||||  | |||||| ||| | |||||||   ||||||   a
           agcuu  c agAGCU CAG G UGUUUCC   AGUgag   u
ccugcuauuau     uu a      A   U C       -CA      cag 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-5907-5p

• Accession: MIMAT0057961
• Description: Haemonchus contortus hco-miR-5907-5p mature miRNA
• Sequence: 23 - AGUCCAACAGAGGUAGUCACUC - 44
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5907-3p

• Accession: MIMAT0023361
• Description: Haemonchus contortus hco-miR-5907-3p mature miRNA
• Sequence: 57 - UGAACCCUUUGUCGUGACAUCGA - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4