Stem-loop hco-mir-5897b

Accession

MI0020037

Description

Haemonchus contortus hco-mir-5897b precursor miRNA

Sequence

9199 reads, 60.0 reads per million, 21 experiments

cacuauaauuugcuuggguuggagauucaguCCCAGAUAAUGCGUACAAAGUCcgacuauaggaggUUUUGUAUGCCUUAUCUGGAAUugaucacaaccuuuaugcagaa
........(((((..((((((..(((.((((.((((((((.((((((((((.((..(....)..)))))))))))).)))))))).))))))).))))))....))))).

Structure

cacuauaa     --uu      ga   u    C        U          U  ga u 
        uuugc    ggguug  gau cagu CCAGAUAA GCGUACAAAG Cc  c a
        |||||    ||||||  ||| |||| |||||||| |||||||||| ||  |  
        agacg    uccaac  cua guUA GGUCUAUU CGUAUGUUUU gg  g u
-------a     uauu      -a   -    A        C          -  ag a 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-5897b-5p

• Accession: MIMAT0057962
• Description: Haemonchus contortus hco-miR-5897b-5p mature miRNA
• Sequence: 32 - CCCAGAUAAUGCGUACAAAGUC - 53
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5897b-3p

• Accession: MIMAT0023364
• Description: Haemonchus contortus hco-miR-5897b-3p mature miRNA
• Sequence: 67 - UUUUGUAUGCCUUAUCUGGAAU - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4