Stem-loop hco-mir-5909

Accession

MI0020038

Description

Haemonchus contortus hco-mir-5909 precursor miRNA

Sequence

1547 reads, 14.0 reads per million, 19 experiments

agcuuuggaguugauugaaggAGAAGAAUGGAGAGUUGCAGGAgcugaguaccuUCUGCAACUCUUCAUUCUUGUCcgucagcucuccuuugguuuuau
.(((..(((((((((....(((.(((((((((((((((((((((........))))))))))))))))))))).)))))))))))).....))).....

Structure

----a   ---uu         ugaa   G                     cug 
     gcu     ggaguugau    ggA AAGAAUGGAGAGUUGCAGGAg   a
     |||     |||||||||    ||| |||||||||||||||||||||    
     ugg     ucucgacug    cCU UUCUUACUUCUCAACGUCUuc   g
uauuu   uuucc         ----   G                     cau 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-5909-5p

• Accession: MIMAT0057963
• Description: Haemonchus contortus hco-miR-5909-5p mature miRNA
• Sequence: 22 - AGAAGAAUGGAGAGUUGCAGGA - 43
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5909-3p

• Accession: MIMAT0023365
• Description: Haemonchus contortus hco-miR-5909-3p mature miRNA
• Sequence: 55 - UCUGCAACUCUUCAUUCUUGUC - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4