Stem-loop hco-mir-5909

Accession

MI0020038

Description

Haemonchus contortus hco-mir-5909 precursor miRNA

Sequence

agcuuuggaguugauugaaggagaagaauggagaguugcaggagcugaguaccuUCUGCAACUCUUCAUUCUUGUCcgucagcucuccuuugguuuuau
.(((..(((((((((....(((.(((((((((((((((((((((........))))))))))))))))))))).)))))))))))).....))).....

Structure

----a   ---uu         ugaa   g                     cug 
     gcu     ggaguugau    gga aagaauggagaguugcaggag   a
     |||     |||||||||    ||| |||||||||||||||||||||    
     ugg     ucucgacug    cCU UUCUUACUUCUCAACGUCUuc   g
uauuu   uuucc         ----   G                     cau 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-5909

• Accession: MIMAT0023365
• Description: Haemonchus contortus hco-miR-5909 mature miRNA
• Sequence: 55 - UCUGCAACUCUUCAUUCUUGUC - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4