Stem-loop hco-mir-5911a

Accession

MI0020040

Description

Haemonchus contortus hco-mir-5911a precursor miRNA

Sequence

744 reads, 6.0 reads per million, 18 experiments

uugaugguguuGUGAGGCUGACUUGCUUGGGAguucauucaugucccUAAGCGCUUCAUCCUUAUAGACaccuucagcg
((((.((((((((((((.(((..(((((((((...........)))).)))))..))).))))))).))))).))))..

Structure

--    u     -       C   CU     -    guuc 
  uuga ggugu uGUGAGG UGA  UGCUU GGGA    a
  |||| ||||| ||||||| |||  ||||| ||||    u
  gacu ccaCA AUAUUCC ACU  GCGAA cccu    u
gc    u     G       U   UC     U    guac 

Annotation confidence Medium

Genome context

Unknown

Mature hco-miR-5911a-5p

• Accession: MIMAT0057964
• Description: Haemonchus contortus hco-miR-5911a-5p mature miRNA
• Sequence: 12 - GUGAGGCUGACUUGCUUGGGA - 32
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5911a-3p

• Accession: MIMAT0023367
• Description: Haemonchus contortus hco-miR-5911a-3p mature miRNA
• Sequence: 48 - UAAGCGCUUCAUCCUUAUAGAC - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4