Stem-loop hco-mir-84a

Accession

MI0020041

Description

Haemonchus contortus hco-mir-84a precursor miRNA

Literature search

2 open access papers mention hco-mir-84a
(2 sentences)

Sequence

48971 reads, 709.0 reads per million, 21 experiments

uagagcugagcucagugcacagcUGAGGUAGUUUUAAAUGUUAUGAuuuuauuguucAUAACAUUUAUCCUACUUCGUCuguucaugaguuauauccugacu
..((....((((((.((.((((.((((((((...((((((((((((.........))))))))))))..)))))))).)))).))))))))...))......

Structure

----ua  gcug      g  c    c        UUU            uuu 
      ga    agcuca ug acag UGAGGUAG   UAAAUGUUAUGA   u
      ||    |||||| || |||| ||||||||   ||||||||||||   a
      cu    uugagu ac uguC GCUUCAUC   AUUUACAAUAcu   u
ucaguc  -aua      -  u    U        -CU            ugu 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-84a-5p

• Accession: MIMAT0023368
• Description: Haemonchus contortus hco-miR-84a-5p mature miRNA
• Sequence: 24 - UGAGGUAGUUUUAAAUGUUAUGA - 46
• Evidence: experimental ; Illumina [1]

Mature hco-miR-84a-3p

• Accession: MIMAT0057965
• Description: Haemonchus contortus hco-miR-84a-3p mature miRNA
• Sequence: 58 - AUAACAUUUAUCCUACUUCGUC - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4