miRBase entry: hco-mir-5890b

Stem-loop hco-mir-5890b


Accession
MI0020043
Description
Haemonchus contortus hco-mir-5890b precursor miRNA


Sequence

7065 reads, 61.0 reads per million, 19 experiments
uaugcggcagcAUAGGACUGAAUUGUGGGAGgacuuauaugauccUACCCCUUUUCAUUUUUAUGCUgcuuuggag
.....((((((((((((.((((..(.((((((((......).)))).))))..)))).))))))))))))......

Structure
-uaugc            C    UU U   -    - uu 
      ggcagcAUAGGA UGAA  G GGG AGga c  a
      |||||||||||| ||||  | ||| |||| |   
      ucgUCGUAUUUU ACUU  C CCC Uccu g  u
gagguu            U    UU -   A    a ua 


Annotation confidence High
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5890b-5p

Accession MIMAT0023370
Description Haemonchus contortus hco-miR-5890b-5p mature miRNA
Sequence 12 - AUAGGACUGAAUUGUGGGAG - 31
Evidence experimental
Illumina [1]

Mature hco-miR-5890b-3p

Accession MIMAT0023371
Description Haemonchus contortus hco-miR-5890b-3p mature miRNA
Sequence 46 - UACCCCUUUUCAUUUUUAUGCU - 67
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4