Stem-loop hco-mir-5890b

Accession

MI0020043

Description

Haemonchus contortus hco-mir-5890b precursor miRNA

Sequence

uaugcggcagCAUAGGACUGAAUUGUGGGAGgacuuauaugauccUACCCCUUUUCAUUUUUAUGCugcuuuggag
.....((((((((((((.((((..(.((((((((......).)))).))))..)))).))))))))))))......

Structure

-uaugc            C    UU U   -    - uu 
      ggcagCAUAGGA UGAA  G GGG AGga c  a
      |||||||||||| ||||  | ||| |||| |   
      ucguCGUAUUUU ACUU  C CCC Uccu g  u
gagguu            U    UU -   A    a ua 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-5890b-5p

• Accession: MIMAT0023370
• Description: Haemonchus contortus hco-miR-5890b-5p mature miRNA
• Sequence: 11 - CAUAGGACUGAAUUGUGGGAG - 31
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5890b-3p

• Accession: MIMAT0023371
• Description: Haemonchus contortus hco-miR-5890b-3p mature miRNA
• Sequence: 46 - UACCCCUUUUCAUUUUUAUGC - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4