miRBase entry: hco-mir-5904b

Stem-loop hco-mir-5904b


Accession
MI0020045
Description
Haemonchus contortus hco-mir-5904b precursor miRNA


Sequence

2509 reads, 22.0 reads per million, 21 experiments
gcuuccccguuuucgAGUGUCGUGGUGGCUUUUACAAacugaaguauuGUAAACCCUCUACUUCACUUCGAAaauaagaagg
.((((...(((((((((((..((((.((..(((((((((....)).))))))).)).))))..))).))))))))..)))).

Structure
g    ccc        -   UC    U  CU       -  u 
 cuuc   guuuucgA GUG  GUGG GG  UUUACAA ac g
 ||||   |||||||| |||  |||| ||  ||||||| ||  
 gaag   uaaAAGCU CAC  CAUC CC  AAAUGuu ug a
g    -aa        U   UU    U  -C       a  a 


Annotation confidence High
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5904b-5p

Accession MIMAT0057967
Description Haemonchus contortus hco-miR-5904b-5p mature miRNA
Sequence 16 - AGUGUCGUGGUGGCUUUUACAA - 37
Evidence experimental
Illumina [1]

Mature hco-miR-5904b-3p

Accession MIMAT0023373
Description Haemonchus contortus hco-miR-5904b-3p mature miRNA
Sequence 49 - GUAAACCCUCUACUUCACUUCGAA - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4