Stem-loop hco-mir-790

Accession

MI0020046

Description

Haemonchus contortus hco-mir-790 precursor miRNA

Sequence

1640727 reads, 13482.0 reads per million, 18 experiments

gcuaugacggCUUGGCACUCGAGAACGACUGCGcagaugacgCAGCGAUCGACGGUGCCAAACCaacggcucgcca
(((..(..((.(((((((.((.((.((.((((((....).))))))).))..))))))))).))..))))......

Structure

------   au ac  C       U  -A  A  A     - a 
      gcu  g  gg UUGGCAC CG  GA CG CUGCG c g
      |||  |  || ||||||| ||  || || ||||| |  
      cgg  c  CC AACCGUG GC  CU GC GACgc g a
accgcu   -- aa  A       -  AG  A  -     a u 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-790-5p

• Accession: MIMAT0023374
• Description: Haemonchus contortus hco-miR-790-5p mature miRNA
• Sequence: 11 - CUUGGCACUCGAGAACGACUGCG - 33
• Evidence: experimental ; Illumina [1]

Mature hco-miR-790-3p

• Accession: MIMAT0057968
• Description: Haemonchus contortus hco-miR-790-3p mature miRNA
• Sequence: 43 - CAGCGAUCGACGGUGCCAAACC - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4