Stem-loop hco-mir-5912a

Accession

MI0020048

Description

Haemonchus contortus hco-mir-5912a precursor miRNA

Sequence

acuuugguguggggugggguuaggugcauucggguauguccucggguagucggaUAUUCGAAUCAUCUGCUCCCAGCCaagcuauauu
....((((...((.(((((.((((((.((((((((((....((((....)))))))))))))))))))).))))).))..))))....

Structure

acuu    gug  g     u      c          gucc    g 
    uggu   gg ugggg uaggug auucggguau    ucgg u
    ||||   || ||||| |||||| ||||||||||    ||||  
    aucg   CC ACCCU GUCUAC UAAGCUUAUa    ggcu a
uuau    -aa  G     C      -          ----    g 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-5912a

• Accession: MIMAT0023376
• Description: Haemonchus contortus hco-miR-5912a mature miRNA
• Sequence: 55 - UAUUCGAAUCAUCUGCUCCCAGCC - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4