Stem-loop hco-mir-5890c

Accession

MI0020050

Description

Haemonchus contortus hco-mir-5890c precursor miRNA

Sequence

uaugcggcagCAUAUAACUGAACUGUGGGAGgacucauaugauucuaccccucuucauuuuuaugcugcuucggag
...(.(((((((((.((.((((..(.(((.(((.((....)).))).))))..)))).)).))))))))).)....

Structure

-uau c         U  C    CU U   A   c  a 
    g ggcagCAUA AA UGAA  G GGG Gga uc u
    | ||||||||| || ||||  | ||| ||| ||  
    c ucgucguau uu acuu  c ccc ucu ag a
gagg u         u  u    cu -   a   u  u 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-5890c

• Accession: MIMAT0023378
• Description: Haemonchus contortus hco-miR-5890c mature miRNA
• Sequence: 11 - CAUAUAACUGAACUGUGGGAG - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4