Stem-loop hco-mir-5897c

Accession

MI0020052

Description

Haemonchus contortus hco-mir-5897c precursor miRNA

Sequence

ugguuggaagaacagucccagaugauucguacaaaguccgaccauaggaggUUUUGUAUGUAUUAUCUGGAAUUgugcacaacc
.(((((.....(((((.(((((((((.(((((((((.((..(....)..))))))))))).))))))))).)))))...)))))

Structure

u     gaaga     c         u         u  ga c 
 gguug     acagu ccagaugau cguacaaag cc  c a
 |||||     ||||| ||||||||| ||||||||| ||  |  
 ccaac     ugUUA GGUCUAUUA GUAUGUUUU gg  g u
-     --acg     A         U         -  ag a 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-5897c

• Accession: MIMAT0023380
• Description: Haemonchus contortus hco-miR-5897c mature miRNA
• Sequence: 52 - UUUUGUAUGUAUUAUCUGGAAUU - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4