Stem-loop hco-mir-5352

Accession

MI0020053

Description

Haemonchus contortus hco-mir-5352 precursor miRNA

Literature search

3 open access papers mention hco-mir-5352
(72 sentences)

Sequence

1088047 reads, 12043.0 reads per million, 21 experiments

ucaaaugucgccccaaacccugCGGGCGUGCUCGUUGUGCAGUguguugucugaucaUUGCACAUGAUGUACGACCUGCAgggucaauccuugacccguacccc
......((((......(((((((((((((((((((.((((((((.(((....))))))))))))))).))))).)))))))))).......)))).........

Structure

---ucaaau    -ccccaa          -     -    U        u   g 
         gucg       acccugCGGG CGUGC UCGU GUGCAGUg guu u
         ||||       |||||||||| ||||| |||| |||||||| |||  
         cagu       ugggACGUCC GCAUG AGUA CACGUUac uag c
ccccaugcc    uccuaac          A     U    -        -   u 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-5352-5p

• Accession: MIMAT0057971
• Description: Haemonchus contortus hco-miR-5352-5p mature miRNA
• Sequence: 23 - CGGGCGUGCUCGUUGUGCAGU - 43
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5352-3p

• Accession: MIMAT0023381
• Description: Haemonchus contortus hco-miR-5352-3p mature miRNA
• Sequence: 58 - UUGCACAUGAUGUACGACCUGCA - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4