Stem-loop hco-mir-5913

Accession

MI0020054

Description

Haemonchus contortus hco-mir-5913 precursor miRNA

Sequence

auuguccagaacucgguauauugcgucucgcugcauccuacuaaaccuucauccgccauuaggcggAUAAAGGUCUAGUAGUGAUGCAgugagagccucucuucugaagu
......(((((...(((........((((((((((((((((((.(((((.(((((((....))))))).))))).)))))).)))))))))))))))....)))))....

Structure

auuguc     -cuc   auauugcg            -      a     c       a 
      cagaa    ggu        ucucgcugcauc cuacua accuu auccgcc u
      |||||    |||        |||||||||||| |||||| ||||| |||||||  
      gucuu    ccg        agagugACGUAG GAUGAU UGGAA UAggcgg u
--ugaa     cucu   --------            U      C     A       a 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-5913

• Accession: MIMAT0023382
• Description: Haemonchus contortus hco-miR-5913 mature miRNA
• Sequence: 67 - AUAAAGGUCUAGUAGUGAUGCA - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4