Stem-loop hco-mir-235

Accession

MI0020060

Description

Haemonchus contortus hco-mir-235 precursor miRNA

Literature search

1 open access papers mention hco-mir-235
(1 sentences)

Sequence

882515 reads, 7065.0 reads per million, 19 experiments

augaacacuucgugugucggcuAGGUCUGGUCGAUUGCCAUGUUuggcuaucgaaUAUUGCACUCGCCCCGGCCUGAcugcaccgaagaccuuucgacccu
.......(((((.(((.(((.((((((.((.(((.(((.(((((((.....))))))).))).))).)).)))))).))))))))))).............

Structure

------augaaca     u   u   c      U  U   U   C       g 
             cuucg gug cgg uAGGUC GG CGA UGC AUGUUug c
             ||||| ||| ||| |||||| || ||| ||| ||||||| u
             gaagc cac guc GUCCGG CC GCU ACG UAUaagc a
ucccagcuuucca     -   -   A      C  C   C   U       u 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-235-5p

• Accession: MIMAT0057975
• Description: Haemonchus contortus hco-miR-235-5p mature miRNA
• Sequence: 23 - AGGUCUGGUCGAUUGCCAUGUU - 44
• Evidence: experimental ; Illumina [1]

Mature hco-miR-235-3p

• Accession: MIMAT0023388
• Description: Haemonchus contortus hco-miR-235-3p mature miRNA
• Sequence: 56 - UAUUGCACUCGCCCCGGCCUGA - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4