Stem-loop hco-mir-228

Accession

MI0020061

Description

Haemonchus contortus hco-mir-228 precursor miRNA

Literature search

6 open access papers mention hco-mir-228
(13 sentences)

Sequence

9859596 reads, 76835.0 reads per million, 21 experiments

ggagaucccgAAAUGGCACUGCAUGAAUUCACGGuuguugcucgggccGUGCAUCCAGUGGUUCCAUACCgggucgcugccg
((((..((((..((((.(((((.((.((.(((((((........))))))).)).))))))).))))..))))...)).)).

Structure

-  -  -au    AA    C     A  A  U       guu 
 gg ag   cccg  AUGG ACUGC UG AU CACGGuu   g
 || ||   ||||  |||| ||||| || || |||||||    
 cc uc   gggC  UACC UGGUG AC UA GUGccgg   c
g  g  gcu    CA    U     -  C  C       gcu 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-228-5p

• Accession: MIMAT0023389
• Description: Haemonchus contortus hco-miR-228-5p mature miRNA
• Sequence: 11 - AAAUGGCACUGCAUGAAUUCACGG - 34
• Evidence: experimental ; Illumina [1]

Mature hco-miR-228-3p

• Accession: MIMAT0057976
• Description: Haemonchus contortus hco-miR-228-3p mature miRNA
• Sequence: 49 - GUGCAUCCAGUGGUUCCAUACC - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4