Stem-loop hco-mir-5920

Accession

MI0020066

Description

Haemonchus contortus hco-mir-5920 precursor miRNA

Sequence

gguguacaggGUUUUGUCAUUCGUAUUGUGAAGCgacaauaugcuuucaucguaugcgaugccaaaauccagaccca
((.((.(.((((((((.(((((((((.(((((((........)).))))).))))).)))).)))))))).))))).

Structure

-  u  a a        U    -     U     -  gac 
 gg gu c ggGUUUUG CAUU CGUAU GUGAA GC   a
 || || | |||||||| |||| ||||| ||||| ||    
 cc ca g ccuaaaac guag guaug uacuu cg   a
a  -  - a        c    c     c     u  uau 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-5920

• Accession: MIMAT0023394
• Description: Haemonchus contortus hco-miR-5920 mature miRNA
• Sequence: 11 - GUUUUGUCAUUCGUAUUGUGAAGC - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4