Stem-loop hco-mir-5921

Accession

MI0020067

Description

Haemonchus contortus hco-mir-5921 precursor miRNA

Sequence

4551 reads, 39.0 reads per million, 21 experiments

auuccuccuacuugcagacauucUGCAAUGAAAUCUAGUAGACCUaggagaguauggCCUAUUAGUUUUCCUUGCCGAaagucuccauugauacgaaauacu
............((.((((.(((.((((.((((.(((((((.((...........)).))))))).)))).)))).))).)))).))...............

Structure

---auuccuccuacu  c    a   U    U    U       A  Uagg 
               ug agac uuc GCAA GAAA CUAGUAG CC    a
               || |||| ||| |||| |||| ||||||| ||    g
               ac ucug aAG CGUU CUUU GAUUAUC gg    a
ucauaaagcauaguu  c    a   C    C    U       C  uaug 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-5921-5p

• Accession: MIMAT0023395
• Description: Haemonchus contortus hco-miR-5921-5p mature miRNA
• Sequence: 24 - UGCAAUGAAAUCUAGUAGACCU - 45
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5921-3p

• Accession: MIMAT0023396
• Description: Haemonchus contortus hco-miR-5921-3p mature miRNA
• Sequence: 58 - CCUAUUAGUUUUCCUUGCCGA - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4