Stem-loop hco-mir-5923

Accession

MI0020070

Description

Haemonchus contortus hco-mir-5923 precursor miRNA

Sequence

41 reads, 1.0 reads per million, 19 experiments

agaaacaacaccagguaccaggUCUGCCAAAACGCUCUCUUUUGgaagcugcuacaAAGGAGUGCGGAAUGGUAGACCuggaccuguuccugcgaggcu
...........(((((.((((((((((((...(((.((((((((..........)))))))).)))...))))))))))))))))).............

Structure

--agaaacaacac     a            AAA   U        gaag 
             caggu ccaggUCUGCCA   CGC CUCUUUUG    c
             ||||| ||||||||||||   ||| ||||||||     
             gucca gguCCAGAUGGU   GCG GAGGAAac    u
ucggagcguccuu     -            AAG   U        aucg 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-5923-5p

• Accession: MIMAT0023399
• Description: Haemonchus contortus hco-miR-5923-5p mature miRNA
• Sequence: 23 - UCUGCCAAAACGCUCUCUUUUG - 44
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5923-3p

• Accession: MIMAT0057978
• Description: Haemonchus contortus hco-miR-5923-3p mature miRNA
• Sequence: 57 - AAGGAGUGCGGAAUGGUAGACC - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4