Stem-loop hco-mir-5890e

Accession

MI0020073

Description

Haemonchus contortus hco-mir-5890e precursor miRNA

Sequence

12750 reads, 99.0 reads per million, 21 experiments

agucacgcauuuaugcggcagcAUAGGACUGAACUGUGGGAGAacuuauaugauucUACCCCUUUUCAUACUUAUGCugcuucagaggugaauucacaa
.......(((((.((.(((((((((((..((((..(.((((((((......).)))).))))..))))..))))))))))).)).))))).........

Structure

--agucacg     a  c           AC    CU U   -    - uu 
         cauuu ug ggcagcAUAGG  UGAA  G GGG AGAa c  a
         ||||| || |||||||||||  ||||  | ||| |||| |   
         gugga ac ucguCGUAUUC  ACUU  C CCC Ucuu g  u
aacacuuaa     g  u           AU    UU -   A    a ua 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-5890e-5p

• Accession: MIMAT0023402
• Description: Haemonchus contortus hco-miR-5890e-5p mature miRNA
• Sequence: 23 - AUAGGACUGAACUGUGGGAGA - 43
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5890e-3p

• Accession: MIMAT0057979
• Description: Haemonchus contortus hco-miR-5890e-3p mature miRNA
• Sequence: 57 - UACCCCUUUUCAUACUUAUGC - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4